Ever since Keystone went to "under mount sinks" I've been wondering when the problems were going to start with the laminated " MDF countertops getting wet and swelling....
Surprisingly, you're the first I've heard of with the problem, so apparently Keystone's "sealing process" is much better than I suspected it would be...
Of course, that doesn't help you, but.....
I'd urge an above the counter installation if you're going to stay with laminate countertops on MDF. If you're considering a solid surface, there are some "half thickness" offerings (light weight products) available from various suppliers.
Here is one link to 1/4" thick solid surface tops:
https://www.solidsurface.com/product...?thickness=632